Twilight
Twilight gives a 5s damage resistance debuff after hitting an enemy with a skill.
Since Acacia's support skill deals damage continuously, this is basically a permanent effect.
Amarna
Gives a 15s ballistic damage buff after using their support skill.
When the support skill deals damage, increases ATK for 1.5s.
Acacia can generally maintain these buffs permanently whilst her support skill is active.
...and Acacia can maintain her support skill indefinitely with some Skill Haste buffs.
Amarna is good when supporting ballistic operatives, but Twilight is good for all operatives.
For the Special talent, Acacia want +8.5% Frost Damage.
As a support, Kaguya doesn't deal much damage, but there are no other Special Talents that are actually useful to her other than Frost Damage.
For the basic stats, Acacia wants +19.3 Skill Haste.
Skill Haste gives Acacia much higher uptime on her support skill, and Skill Haste is thus her best stat.
Since none of Acacia's debuffs actually scale with her ATK stat, +10.0% ATK is not overly useful for her - it will increase the damage her support skill deals, but even with +ATK it's still not going to be doing a lot of damage.
If using Prismatic Igniter, +ATK is a useful stat, as Prismatic Igniters ATK buff is based on Acacia's ATK.
Alignment Index gives the full squad more damage against enemies inflicted with a Movement Speed Reduction... which her support skill doesn't inflict.
As such, Alignment Index isn't an overly useful stat for her.
Her ult can inflict it, but for shorter fights where you can't use her ult, Alignment Index is useless.
Similarly, her ult doesn't really do that much - it just deals damage and reduces their movement speed, which is quite weak for an ult.
Similarly again, since Acacia's ult is quite weak, you are often better off using the ult of your main dps rather than Acacia's.
As such, you may not be able to use Acacia's ult to get any use out of her Alignment Index at all, making any investment into it redundant.
Acacia can make use of S-Energy, as with her Skill Haste mods she can use S-Energy much faster than she uses it.
Skill Haste is her best mod.
S-Energy regen, ATK, and Alignment Index are all ok, but none are nearly as good as Skill Haste.
S-Energy is a good second stat for longer fights
+ATK can allow Acacia to deal a bit more damage, which will be more useful for shorter fights.
Alignment gives a bit more of a damage buff to the main dps after acacia uses her ult
Overall I'd recommend Skill Haste and S-Energy Regen, but ATK and Alignment Index can be better depending on how you intend to use her.